Faculty of Biology Bioinformatics
Index of subjects: I Semester: Introduction to Informatics if it fits it ships Computer Networks Fundamentals of Bioinformatics bioinformatics if it fits it ships analysis Semester II: Working if it fits it ships with databases genomics and molecular evolution Mapping and sequencing of the genome WEB Design and Programming II I semester: Fundamentals of Statistics Programming Perl Programming in Bioinformatics Proteomics
Fundamentals of Bioinformatics Lecturer: Vesselin Baev e-mail: baev@uni-plovdiv.bg Index of the course: Prerequisites Technical Summary certain supplies thematic content of the training Course Literature
Course in Bioinformatics's main objective is to familiarize students with the basics of applied science combining computer science with modern biology. As a basic introductory course, he e based on the clarification of methods and models that informatics contributes to the development of molecular biology. if it fits it ships
The course begins with lectures which deal with basic tools and methods of Bioinformatics. DNA, protein sequences and structures, genomes and proteome databases and data mining, if it fits it ships WWW and computer programming.
The third part of the course if it fits it ships introduces students to the basic knowledge of Internet use in bioinformatics. The main archives database, and how to extract information from them.
Next topic classes are analyzes of the relationship between sequence-alaynmant and phylogenetic trees. These methods are essential for solving one of the main tasks of bioinformatics: the search for distant relationships between the genomes of different organisms and tracing the course of evolution of the species level and the molecular level.
Students should know and / or be able to:-have basic knowledge of computer architecture, computer networks, to know the basic principles of molecular biology and molecular evolution to be able to absorb the material foundations of bioinformatics
-Speed if it fits it ships Internet, a computer lab, bioinformatics workstations (servers) bioinformatics if it fits it ships software-local bio-electronic databases (CC) and a paper copy of the lectures, web-portal of the academic unit with all the necessary materials for self-study and preparation.
4. PDB; Dedicated DB Arabidopsis, org, WormBase, TIGR. Specialized if it fits it ships database FlyBase, Rfam, miRNA registry data and dr.Bazi proteins ProDom, InterPro, if it fits it ships Pfam, ProSyte and dr.Tarsene and retrieve data from the database, creating a local database.
5. Comparison of nucleotide if it fits it ships and protein sequences - and important application if it fits it ships of the method. Types of negative and positive results on bioinformatics analysis, sensitivity and selectivity of the programs.
8. Bioinformatics RNA types pairings in RNA types RNAs, antisense RNK.Niva structure of RNA. A secondary structure of RNA - elements of the structure. Display 2D structures. Prediction of the secondary structure of RNA. Calculating the energy of 2D RNA structure. Types of structural simulation of RNA. Mfold.
References 1. Introduction to Bioinformatics, Oxford University Press 2. Bioinfromatics - sequence and genome analysis, if it fits it ships Cold Spring Harbor Laboratory Press 3. Bioinformatics: A practical guide to the analysis of genes and proteins, John Wiley & Sons . Computer Networks
Index of the course: Prerequisites Summary Technical Competencies certain supplies thematic content of the training Course Literature Speaker: Viktor Ivanov e-mail: viktor@uni-plovdiv.bg
Bioinformatics, as an interdisciplinary science is served by many service science. Bioinformatics work demands a knowledge of computer if it fits it ships networks and the Internet to achieve the goals and objectives if it fits it ships set by biology. The internet is a valuable and irreplaceable resource for information transmission medium for communication and processing of bioinformatics data. Therefore, bioinformatics curriculum if it fits it ships requires study of computer networks, their detailed understanding and administration.
Computer-structure and principle of operation, Introduction to computers Web-based computer networks, network devices, network transmission media, types of network architecture (topology) if it fits it ships Network protocols-Internet-Fundamentals of Ethernet technology
After completing the course, students will be ready to decide nd
Index of subjects: I Semester: Introduction to Informatics if it fits it ships Computer Networks Fundamentals of Bioinformatics bioinformatics if it fits it ships analysis Semester II: Working if it fits it ships with databases genomics and molecular evolution Mapping and sequencing of the genome WEB Design and Programming II I semester: Fundamentals of Statistics Programming Perl Programming in Bioinformatics Proteomics
Fundamentals of Bioinformatics Lecturer: Vesselin Baev e-mail: baev@uni-plovdiv.bg Index of the course: Prerequisites Technical Summary certain supplies thematic content of the training Course Literature
Course in Bioinformatics's main objective is to familiarize students with the basics of applied science combining computer science with modern biology. As a basic introductory course, he e based on the clarification of methods and models that informatics contributes to the development of molecular biology. if it fits it ships
The course begins with lectures which deal with basic tools and methods of Bioinformatics. DNA, protein sequences and structures, genomes and proteome databases and data mining, if it fits it ships WWW and computer programming.
The third part of the course if it fits it ships introduces students to the basic knowledge of Internet use in bioinformatics. The main archives database, and how to extract information from them.
Next topic classes are analyzes of the relationship between sequence-alaynmant and phylogenetic trees. These methods are essential for solving one of the main tasks of bioinformatics: the search for distant relationships between the genomes of different organisms and tracing the course of evolution of the species level and the molecular level.
Students should know and / or be able to:-have basic knowledge of computer architecture, computer networks, to know the basic principles of molecular biology and molecular evolution to be able to absorb the material foundations of bioinformatics
-Speed if it fits it ships Internet, a computer lab, bioinformatics workstations (servers) bioinformatics if it fits it ships software-local bio-electronic databases (CC) and a paper copy of the lectures, web-portal of the academic unit with all the necessary materials for self-study and preparation.
4. PDB; Dedicated DB Arabidopsis, org, WormBase, TIGR. Specialized if it fits it ships database FlyBase, Rfam, miRNA registry data and dr.Bazi proteins ProDom, InterPro, if it fits it ships Pfam, ProSyte and dr.Tarsene and retrieve data from the database, creating a local database.
5. Comparison of nucleotide if it fits it ships and protein sequences - and important application if it fits it ships of the method. Types of negative and positive results on bioinformatics analysis, sensitivity and selectivity of the programs.
8. Bioinformatics RNA types pairings in RNA types RNAs, antisense RNK.Niva structure of RNA. A secondary structure of RNA - elements of the structure. Display 2D structures. Prediction of the secondary structure of RNA. Calculating the energy of 2D RNA structure. Types of structural simulation of RNA. Mfold.
References 1. Introduction to Bioinformatics, Oxford University Press 2. Bioinfromatics - sequence and genome analysis, if it fits it ships Cold Spring Harbor Laboratory Press 3. Bioinformatics: A practical guide to the analysis of genes and proteins, John Wiley & Sons . Computer Networks
Index of the course: Prerequisites Summary Technical Competencies certain supplies thematic content of the training Course Literature Speaker: Viktor Ivanov e-mail: viktor@uni-plovdiv.bg
Bioinformatics, as an interdisciplinary science is served by many service science. Bioinformatics work demands a knowledge of computer if it fits it ships networks and the Internet to achieve the goals and objectives if it fits it ships set by biology. The internet is a valuable and irreplaceable resource for information transmission medium for communication and processing of bioinformatics data. Therefore, bioinformatics curriculum if it fits it ships requires study of computer networks, their detailed understanding and administration.
Computer-structure and principle of operation, Introduction to computers Web-based computer networks, network devices, network transmission media, types of network architecture (topology) if it fits it ships Network protocols-Internet-Fundamentals of Ethernet technology
After completing the course, students will be ready to decide nd
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